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Last updated on 2025-01-27.

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Hongxiang Fan

Curriculum Vitæ

I am currently working as a consultant in Biostatistics in the field of genetics, i.e., proteomics, metabolomics, transcriptomics, etc. in Lille & Paris, France.

Education

Doctor of Philosophy (Ph.D.) in Biostatistics

University of Lille

Lille, France

Oct. 2014 - Sep. 2017

Master’s Degree in Biostatistics, Bioinformatics and Genomics (Specialised in Biostatistics)

University Claude Bernard Lyon 1

Lyon, France

Sep. 2009 - Jul. 2011

Bachelor’s Degree in Biology (Specialised in Biostatistics)

University Claude Bernard Lyon 1

Lyon, France

Sep. 2006 - Jul. 2009

Professional Experience

Consulting Senior Biostatistician (IT&M Stats)

L’Oréal

Lille, France

Nov. 2022 - Present

Activities: Statistical analyses of lipidomics and microbiome data

Head of Biostatistics (Institut Pasteur de Lille)

Functional (Epi)genomics and Molecular
Physiology of Diabetes and Related Diseases
Inserm U1283 / CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)

Lille, France

Jan. 2020 - Oct. 2022

Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management

Head of Biostatistics (Institut Pasteur de Lille)

Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)

Lille, France

Oct. 2017 - Dec. 2019

Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management

Head of Biostatistics (CNRS)

Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)

Lille, France

Jan. 2016 - Sep. 2017

Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management

Biostatistician (CNRS)

Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)

Lille, France

Sep. 2012 - Dec. 2015

Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments

Biostatistician

French Institute of Science and Technology for
Transport, Development and Networks
(IFSTTAR)
UMRESTTE - UMR T9405

Bron, France

Nov. 2011 - Dec. 2011

Activities: Analysis of a mobility and accident study in secondary-school pupils

Biostatistician (Internship)

Hospices Civiles de Lyon
Biostatistics Unit
CNRS UMR 5558

Lyon, France

Jan. 2011 - Jun. 2011

Activities: Development of a Non-Parametric (on Time) Clustering Algorithm for Longitudinal Data

Biostatistician (Internship)

Biometry and Evolutionary Biology laboratory
(LBBE)
CNRS UMR 5558

Lyon, France

Mar. 2010 - Jun. 2010

Activities: Mathematical Modelling of Nosocomial Rotavirus Infections in Pediatric Ward

Workshop Experience (7)

R Advanced

Six-hours Master course/workshop (in French)

Lille, France

Oct. 2021

Shiny: First Steps

One-day workshop (in French)

Aix en Provence, France

Oct. 2021

R Advanced

Six-hours Master course/workshop (in French)

Lille, France

Nov. 2020

ggplot2

Half-day workshop (in French)

Lille, France

Oct. 2020

R Packages

Thirty minutes overview (in English)

Lille, France

Feb. 2020

Shiny: First Steps

One-day workshop (in French)

Lille, France

Nov. 2019

R and Databases

Two-days workshop (in French)

Lille, France

May 2018

Awards (1)

Funding Allocation SFD-Lilly

“Société Francophone du Diabète”
(SFD)

Bordeaux, France

Mar. 2015

Project: Detection of new genomic variants associated with fasting blood glucose and incidence of type 2 diabetes simultaneously

Oral communications (6)

My Journey To Transparency And Reproducibility

R Lille (rlille.fr)

Online (Lille, France)

Apr. 2021

My Journey To Transparency And Reproducibility (French)

Min2Rien (www.min2rien.fr)

Online (Lille, France)

Apr. 2021

“Débuter” avec R en Commençant par le Début … (French)

R Lille (rlille.fr)

Lille, France

Jan. 2021

Jointly Modelling SNPs With Survival & Longitudinal Trait

A Statistical Seminar Applied on Type 2 Diabetes
(Host: Pr. Paul Franks)

Lund, Sweden

Jan. 2019

Jointly Modelling SNPs With Survival & Longitudinal Trait

Thematic Day “Statistic & Genomic”
of the “Réseau Interdisciplinaire
autour de la Statistique”
(RIS) (ris.cnrs.fr)

Paris, France

Oct. 2018

Longitudinal Genetic Modelling: Revisiting Associations of SNPs Associated With Blood Fasting Glucose in Normoglycemic Individuals

Statistical Methods for Post Genomic Data
(SMPGD) (math.univ-lille1.fr/~celisse/SMPGD)

Lille, France

Feb. 2016

Poster communications (4)

“Variants Génétiques Associés à la Trajectoire de la Glycémie à Jeun et à l’Incidence du Diabète de Type 2: Une Approche par Modèle Joint” (CA-075)

Annual Congress of
“Société Francophone du Diabète”
(SFD)

Lille, France

Mar. 2017

Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach

4th Symposium
European Genomic Institute for Diabetes
(EGID)

Lille, France

Nov. 2016

Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach

International Genetic Epidemiology Society
(IGES)

Toronto, Canada

Oct. 2016

Application of Joint Models in Genetic Association Studies

International Genetic Epidemiology Society
(IGES)

Baltimore, United-States

Oct. 2015

R Packages (6)

insane: An Interactive Web Application for Quality Control and Analysis of Insulin Secretion from Pancreatic Beta Cells

(As author / creator)

CRAN

Nov. 2020

https://cran.r-project.org/package=insane
https://github.com/mcanouil/insane/

CRAN_Status_Badge
GitHub_tag

ggpacman: A ‘ggplot2’ and ‘gganimate’ Version of Pac-Man

(As author / creator)

CRAN

May 2020

https://cran.r-project.org/package=ggpacman
https://github.com/mcanouil/ggpacman/

CRAN_Status_Badge
GitHub_tag

ggnetwork: Geometries to Plot Networks with ‘ggplot2’

(As contributor)

CRAN

Feb. 2020

https://cran.r-project.org/package=ggnetwork
https://github.com/briatte/ggnetwork/

CRAN_Status_Badge
GitHub_tag

NACHO: NanoString Quality Control Dashboard

(As author / creator)

CRAN

Jun. 2018

https://cran.r-project.org/package=NACHO
https://github.com/mcanouil/NACHO/

CRAN_Status_Badge
GitHub_tag

clere: Simultaneous Variables Clustering and Regression

(As author)

CRAN

Feb. 2014

https://cran.r-project.org/package=clere
https://github.com/mcanouil/clere/

CRAN_Status_Badge
GitHub_tag

snpEnrichment: SNPs Enrichment Analysis

(As author / creator)

CRAN

Apr. 2013

https://cran.r-project.org/package=snpEnrichment
https://github.com/mcanouil/snpEnrichment/

CRAN_Status_Badge
GitHub_tag

Publications (24)

Identifying the pattern of shallow groundwater hydrochemistry and its driving factors in a typical estuarine delta of Poyang Lake watershed, China: Insights into water quality assessment

Hongxiang Fan, Fan Song, Huawu Wu, Yao Du, Ruiyu Lei, Mengyao Ding, Kaiwen Li, Jing Li and Congsheng Fu

N/A

Dec. 2024

Journal of Hydrology: Regional Studies

As first or co-first author.

Identifying the spatiotemporal patterns of drought-flood alternation based on IMERG product in the humid subtropical Poyang Lake basin, China

Xianghu Li, Canyu Yuan, Tong Sun and Hongxiang Fan

N/A

Aug. 2024

Understanding thermal stratification and circulation dynamics in Fuxian Lake: Insights from EFDC simulation study

Yingying Liu, Hongming He, Jie Zhou, Hongxiang Fan, Qinglong Wu and Claudio O. Delang

N/A

Aug. 2024

Reproducing surface water isoscapes of δ18O and δ2H across China: A machine learning approach

Huawu Wu, Hongxiang Fan, Jing Li, Fu-Jun Yue, Ergang Lian, Congsheng Fu, Ruiyu Lei, Mengyao Ding, Jinzhao Liu and Xiao-Yan Li

N/A

Jul. 2024

Journal of Hydrology

As first or co-first author.

Comprehensive evaluation of environmental flows in the Yangtze River regulated by two large dams

Junxiang Cheng, Ligang Xu, Rong Wang, Hailin You, Hongxiang Fan and Yakun Wu

N/A

Jul. 2024

Spatio-temporal patterns and drivers of CH4 and CO2 fluxes from rivers and lakes in highly urbanized areas

Longfeng Fan, Junxiang Cheng, Yangcun Xie, Ligang Xu, Alexandre Buttler, Yuexia Wu, Hongxiang Fan and Yakun Wu

N/A

Mar. 2024

Atmospheric processes control the stable isotopic variability of precipitation in the middle–lower reaches of the Yangtze River Basin, East Asian monsoon region

Huawu Wu, Hongxiang Fan, Ruiyu Lei, Chijun Sun, Shengjie Wang, Haohao Wu and Congsheng Fu

N/A

Aug. 2023

Journal of Hydrology

As first or co-first author.

Projection of disaster-causing risk of extreme precipitation in the Yangtze River Basin based on CMIP6

Chengyu Xu, Canyu Yuan, Xianghu Li, Yaling Lin and Hongxiang Fan

N/A

Mar. 2023

Transformer Based Water Level Prediction in Poyang Lake, China

Jiaxing Xu, Hongxiang Fan, Minghan Luo, Piji Li, Taeseop Jeong and Ligang Xu

N/A

Feb. 2023

Water

As first or co-first author.

Insights into Shallow Freshwater Lakes Hydrology in the Yangtze Floodplain from Stable Water Isotope Tracers

Jing Li, Fan Song, Zhicheng Bao, Hongxiang Fan and Huawu Wu

N/A

Feb. 2022

Contributions of climate change and human activities to runoff variations in the Poyang Lake Basin of China

Xiangyong Lei, Lu Gao, Jianhui Wei, Miaomiao Ma, Ligang Xu, […], Xianghu Li, Jianyun Gao, Haofei Dang, Xingwei Chen and Weihua Fang

N/A

Oct. 2021

Soil Quality Assessment Based on a Minimum Data Set: A Case Study of a County in the Typical River Delta Wetlands

Mingliang Jiang, Ligang Xu, Xiaobing Chen, Hua Zhu and Hongxiang Fan

N/A

Oct. 2020

Comparison of Long Short Term Memory Networks and the Hydrological Model in Runoff Simulation

Hongxiang Fan, Mingliang Jiang, Ligang Xu, Hua Zhu, Junxiang Cheng and Jiahu Jiang

N/A

Jan. 2020

Water

As first or co-first author.

Changes in the flow regimes associated with climate change and human activities in the Yangtze River

Junxiang Cheng, Ligang Xu, Hongxiang Fan and Jiahu Jiang

N/A

Aug. 2019

Spatiotemporal Variations of Summer Precipitation and Their Correlations with the East Asian Summer Monsoon in the Poyang Lake Basin, China

Hua Zhu, Ligang Xu, Jiahu Jiang and Hongxiang Fan

N/A

Aug. 2019

Changes in Water Level Regimes in China’s Two Largest Freshwater Lakes: Characterization and Implication

Junxiang Cheng, Ligang Xu, Wenjuan Feng, Hongxiang Fan and Jiahu Jiang

N/A

May 2019

Poyang Lake Wetland Ecosystem Health Assessment of Using the Wetland Landscape Classification Characteristics

Hailin You, Hongxiang Fan, Ligang Xu, Yongming Wu, Lizhen Liu and Zhong Yao

N/A

Apr. 2019

Drought Characteristics and Its Response to the Global Climate Variability in the Yangtze River Basin, China

Tao Huang, Ligang Xu and Hongxiang Fan

N/A

Dec. 2018

Identify the influencing paths of precipitation and soil water storage on runoff: an example from Xinjiang River Basin, Poyang Lake, China

Hongxiang Fan, Ligang Xu, Xiaolong Wang, Yuexia Wu and Jiahu Jiang

N/A

Nov. 2017

Water Supply

As first or co-first author.

Effects of Water Regime on Spring Wetland Landscape Evolution in Poyang Lake between 2000 and 2010

Hailin You, Hongxiang Fan, Ligang Xu, Yongming Wu, Xiaolong Wang, Lizhen Liu, Zhong Yao and Bangyou Yan

N/A

Jun. 2017

Relationship Between Vegetation Community Distribution Patterns and Environmental Factors in Typical Wetlands of Poyang Lake, China

Hongxiang Fan, Ligang Xu, Xiaolong Wang, Jiahu Jiang, Wenjuan Feng and Hailin You

N/A

Apr. 2017

Wetlands

As first or co-first author.

Accessing the Difference in the Climate Elasticity of Runoff across the Poyang Lake Basin, China

Hongxiang Fan, Ligang Xu, Hui Tao, Wenjuan Feng, Junxiang Cheng and Hailin You

N/A

Feb. 2017

Water

As first or co-first author.