Main
Hongxiang Fan
Curriculum Vitæ
I am currently working as a consultant in Biostatistics in the field of genetics, i.e., proteomics, metabolomics, transcriptomics, etc. in Lille & Paris, France.
Education
Doctor of Philosophy (Ph.D.) in Biostatistics
University of Lille
Lille, France
Oct. 2014 - Sep. 2017
Master’s Degree in Biostatistics, Bioinformatics and Genomics (Specialised in Biostatistics)
University Claude Bernard Lyon 1
Lyon, France
Sep. 2009 - Jul. 2011
Bachelor’s Degree in Biology (Specialised in Biostatistics)
University Claude Bernard Lyon 1
Lyon, France
Sep. 2006 - Jul. 2009
Professional Experience
Consulting Senior Biostatistician (IT&M Stats)
L’Oréal
Lille, France
Nov. 2022 - Present
Activities: Statistical analyses of lipidomics and microbiome data
Head of Biostatistics (Institut Pasteur de Lille)
Functional (Epi)genomics and Molecular
Physiology of Diabetes and Related Diseases
Inserm U1283 / CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)
Lille, France
Jan. 2020 - Oct. 2022
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management
Head of Biostatistics (Institut Pasteur de Lille)
Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)
Lille, France
Oct. 2017 - Dec. 2019
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management
Head of Biostatistics (CNRS)
Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)
Lille, France
Jan. 2016 - Sep. 2017
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments, team management
Biostatistician (CNRS)
Laboratory of Integrated Genomics
and Metabolic Diseases Modeling
CNRS UMR 8199 - EGID
(European Genomics Institute for Diabetes)
Lille, France
Sep. 2012 - Dec. 2015
Activities: Genome-wide association studies, experimental design, -omics data analysis, methodological developments
Biostatistician
French Institute of Science and Technology for
Transport, Development and Networks
(IFSTTAR)
UMRESTTE - UMR T9405
Bron, France
Nov. 2011 - Dec. 2011
Activities: Analysis of a mobility and accident study in secondary-school pupils
Biostatistician (Internship)
Hospices Civiles de Lyon
Biostatistics Unit
CNRS UMR 5558
Lyon, France
Jan. 2011 - Jun. 2011
Activities: Development of a Non-Parametric (on Time) Clustering Algorithm for Longitudinal Data
Biostatistician (Internship)
Biometry and Evolutionary Biology laboratory
(LBBE)
CNRS UMR 5558
Lyon, France
Mar. 2010 - Jun. 2010
Activities: Mathematical Modelling of Nosocomial Rotavirus Infections in Pediatric Ward
Workshop Experience (7)
Awards (1)
Funding Allocation SFD-Lilly
“Société Francophone du Diabète”
(SFD)
Bordeaux, France
Mar. 2015
Project: Detection of new genomic variants associated with fasting blood glucose and incidence of type 2 diabetes simultaneously
Oral communications (6)
My Journey To Transparency And Reproducibility (French)
Min2Rien (www.min2rien.fr)
Online (Lille, France)
Apr. 2021
Jointly Modelling SNPs With Survival & Longitudinal Trait
A Statistical Seminar Applied on Type 2 Diabetes
(Host: Pr. Paul Franks)
Lund, Sweden
Jan. 2019
Jointly Modelling SNPs With Survival & Longitudinal Trait
Thematic Day “Statistic & Genomic”
of the “Réseau Interdisciplinaire
autour de la Statistique”
(RIS) (ris.cnrs.fr)
Paris, France
Oct. 2018
Longitudinal Genetic Modelling: Revisiting Associations of SNPs Associated With Blood Fasting Glucose in Normoglycemic Individuals
Statistical Methods for Post Genomic Data
(SMPGD) (math.univ-lille1.fr/~celisse/SMPGD)
Lille, France
Feb. 2016
Poster communications (4)
“Variants Génétiques Associés à la Trajectoire de la Glycémie à Jeun et à l’Incidence du Diabète de Type 2: Une Approche par Modèle Joint” (CA-075)
Annual Congress of
“Société Francophone du Diabète”
(SFD)
Lille, France
Mar. 2017
Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach
4th Symposium
European Genomic Institute for Diabetes
(EGID)
Lille, France
Nov. 2016
Single Nucleotide Polymorphisms Associated With Fasting Blood Glucose Trajectory And Type 2 Diabetes Incidence: A Joint Modelling Approach
International Genetic Epidemiology Society
(IGES)
Toronto, Canada
Oct. 2016
Application of Joint Models in Genetic Association Studies
International Genetic Epidemiology Society
(IGES)
Baltimore, United-States
Oct. 2015
R Packages (6)
insane: An Interactive Web Application for Quality Control and Analysis of Insulin Secretion from Pancreatic Beta Cells
(As author / creator)
CRAN
Nov. 2020
https://cran.r-project.org/package=insane
https://github.com/mcanouil/insane/
ggpacman: A ‘ggplot2’ and ‘gganimate’ Version of Pac-Man
(As author / creator)
CRAN
May 2020
https://cran.r-project.org/package=ggpacman
https://github.com/mcanouil/ggpacman/
ggnetwork: Geometries to Plot Networks with ‘ggplot2’
(As contributor)
CRAN
Feb. 2020
https://cran.r-project.org/package=ggnetwork
https://github.com/briatte/ggnetwork/
NACHO: NanoString Quality Control Dashboard
(As author / creator)
CRAN
Jun. 2018
https://cran.r-project.org/package=NACHO
https://github.com/mcanouil/NACHO/
clere: Simultaneous Variables Clustering and Regression
(As author)
CRAN
Feb. 2014
https://cran.r-project.org/package=clere
https://github.com/mcanouil/clere/
snpEnrichment: SNPs Enrichment Analysis
(As author / creator)
CRAN
Apr. 2013
https://cran.r-project.org/package=snpEnrichment
https://github.com/mcanouil/snpEnrichment/
Publications (24)
Identifying the pattern of shallow groundwater hydrochemistry and its driving factors in a typical estuarine delta of Poyang Lake watershed, China: Insights into water quality assessment
Hongxiang Fan†, Fan Song, Huawu Wu, Yao Du, Ruiyu Lei, Mengyao Ding, Kaiwen Li, Jing Li and Congsheng Fu
N/A
Dec. 2024
† As first or co-first author.
Identifying the spatiotemporal patterns of drought-flood alternation based on IMERG product in the humid subtropical Poyang Lake basin, China
Xianghu Li, Canyu Yuan, Tong Sun and Hongxiang Fan
N/A
Aug. 2024
Understanding thermal stratification and circulation dynamics in Fuxian Lake: Insights from EFDC simulation study
Yingying Liu, Hongming He, Jie Zhou, Hongxiang Fan, Qinglong Wu and Claudio O. Delang
N/A
Aug. 2024
Historical development, impact mechanism and future trends of nitrogen footprint in Wuxi City, China
Chuanhe Xiong, Hengpeng Li, Hongxiang Fan and Akida Askar
N/A
Jul. 2024
Reproducing surface water isoscapes of δ18O and δ2H across China: A machine learning approach
Huawu Wu, Hongxiang Fan†, Jing Li, Fu-Jun Yue, Ergang Lian, Congsheng Fu, Ruiyu Lei, Mengyao Ding, Jinzhao Liu and Xiao-Yan Li
N/A
Jul. 2024
† As first or co-first author.
Comprehensive evaluation of environmental flows in the Yangtze River regulated by two large dams
Junxiang Cheng, Ligang Xu, Rong Wang, Hailin You, Hongxiang Fan and Yakun Wu
N/A
Jul. 2024
Spatio-temporal patterns and drivers of CH4 and CO2 fluxes from rivers and lakes in highly urbanized areas
Longfeng Fan, Junxiang Cheng, Yangcun Xie, Ligang Xu, Alexandre Buttler, Yuexia Wu, Hongxiang Fan and Yakun Wu
N/A
Mar. 2024
Atmospheric processes control the stable isotopic variability of precipitation in the middle–lower reaches of the Yangtze River Basin, East Asian monsoon region
Huawu Wu, Hongxiang Fan†, Ruiyu Lei, Chijun Sun, Shengjie Wang, Haohao Wu and Congsheng Fu
N/A
Aug. 2023
† As first or co-first author.
Projection of disaster-causing risk of extreme precipitation in the Yangtze River Basin based on CMIP6
Chengyu Xu, Canyu Yuan, Xianghu Li, Yaling Lin and Hongxiang Fan
N/A
Mar. 2023
Transformer Based Water Level Prediction in Poyang Lake, China
Jiaxing Xu, Hongxiang Fan†, Minghan Luo, Piji Li, Taeseop Jeong and Ligang Xu
N/A
Feb. 2023
† As first or co-first author.
Decoding river pollution trends and their landscape determinants in an ecologically fragile karst basin using a machine learning model
Guoyu Xu, Hongxiang Fan, David M. Oliver, Yibin Dai, Hengpeng Li, Yuejie Shi, Haifei Long, Kangning Xiong and Zhongming Zhao
N/A
Nov. 2022
Insights into Shallow Freshwater Lakes Hydrology in the Yangtze Floodplain from Stable Water Isotope Tracers
Jing Li, Fan Song, Zhicheng Bao, Hongxiang Fan and Huawu Wu
N/A
Feb. 2022
Contributions of climate change and human activities to runoff variations in the Poyang Lake Basin of China
Xiangyong Lei, Lu Gao, Jianhui Wei, Miaomiao Ma, Ligang Xu, […], Xianghu Li, Jianyun Gao, Haofei Dang, Xingwei Chen and Weihua Fang
N/A
Oct. 2021
Soil Quality Assessment Based on a Minimum Data Set: A Case Study of a County in the Typical River Delta Wetlands
Mingliang Jiang, Ligang Xu, Xiaobing Chen, Hua Zhu and Hongxiang Fan
N/A
Oct. 2020
Comparison of Long Short Term Memory Networks and the Hydrological Model in Runoff Simulation
Hongxiang Fan†, Mingliang Jiang, Ligang Xu, Hua Zhu, Junxiang Cheng and Jiahu Jiang
N/A
Jan. 2020
† As first or co-first author.
Changes in the flow regimes associated with climate change and human activities in the Yangtze River
Junxiang Cheng, Ligang Xu, Hongxiang Fan and Jiahu Jiang
N/A
Aug. 2019
Spatiotemporal Variations of Summer Precipitation and Their Correlations with the East Asian Summer Monsoon in the Poyang Lake Basin, China
Hua Zhu, Ligang Xu, Jiahu Jiang and Hongxiang Fan
N/A
Aug. 2019
Changes in Water Level Regimes in China’s Two Largest Freshwater Lakes: Characterization and Implication
Junxiang Cheng, Ligang Xu, Wenjuan Feng, Hongxiang Fan and Jiahu Jiang
N/A
May 2019
Poyang Lake Wetland Ecosystem Health Assessment of Using the Wetland Landscape Classification Characteristics
Hailin You, Hongxiang Fan, Ligang Xu, Yongming Wu, Lizhen Liu and Zhong Yao
N/A
Apr. 2019
Drought Characteristics and Its Response to the Global Climate Variability in the Yangtze River Basin, China
Tao Huang, Ligang Xu and Hongxiang Fan
N/A
Dec. 2018
Identify the influencing paths of precipitation and soil water storage on runoff: an example from Xinjiang River Basin, Poyang Lake, China
Hongxiang Fan†, Ligang Xu, Xiaolong Wang, Yuexia Wu and Jiahu Jiang
N/A
Nov. 2017
† As first or co-first author.
Effects of Water Regime on Spring Wetland Landscape Evolution in Poyang Lake between 2000 and 2010
Hailin You, Hongxiang Fan, Ligang Xu, Yongming Wu, Xiaolong Wang, Lizhen Liu, Zhong Yao and Bangyou Yan
N/A
Jun. 2017
Relationship Between Vegetation Community Distribution Patterns and Environmental Factors in Typical Wetlands of Poyang Lake, China
Hongxiang Fan†, Ligang Xu, Xiaolong Wang, Jiahu Jiang, Wenjuan Feng and Hailin You
N/A
Apr. 2017
† As first or co-first author.
Accessing the Difference in the Climate Elasticity of Runoff across the Poyang Lake Basin, China
Hongxiang Fan†, Ligang Xu, Hui Tao, Wenjuan Feng, Junxiang Cheng and Hailin You
N/A
Feb. 2017
† As first or co-first author.